Tuesday, December 7, 2010

amino acid

Amino AcidSymbolStructure*pK1
(COOH)
pK2
(NH2)
pK R Group
Amino Acids with Aliphatic R-Groups
GlycineGly - G2.49.8 
AlanineAla - A2.49.9 
ValineVal - V2.29.7 
LeucineLeu - L2.39.7 
IsoleucineIle - I2.39.8 
Non-Aromatic Amino Acids with Hydroxyl R-Groups
SerineSer - S2.29.2~13
ThreonineThr - T2.19.1~13
Amino Acids with Sulfur-Containing R-Groups
CysteineCys - C1.910.88.3
MethionineMet-M2.19.3 
Acidic Amino Acids and their Amides
Aspartic AcidAsp - D2.09.93.9
AsparagineAsn - N2.18.8 
Glutamic AcidGlu - E2.19.54.1
GlutamineGln - Q2.29.1 
Basic Amino Acids
ArginineArg - R1.89.012.5
LysineLys - K2.29.210.8
HistidineHis - H1.89.26.0
Amino Acids with Aromatic Rings
PhenylalaninePhe - F2.29.2 
TyrosineTyr - Y2.29.110.1
TryptophanTrp-W2.49.4 
Amino Acids
ProlinePro - P2.010.6 

PRIMARY STRUCTURE OF PROTEINS
Amino acids are link together in a chain by condensation of the alpha-carboxyl group of one amino acid with the alpha-amino group of another. The linkage is then an amide bond called peptide bond.

The linked amino acid moieties are called residues. When glycine is found in a polypeptide chain it is called a glycyl residue.
The free amino group and the free carboxylic group at the opposite ends of the peptide chain are called the N-terminus and the C-terminus, respectively. At neutral pH, each terminus carries an ionic charge. Amino acid residues are numbered from the N-terminus to the C-terminus and are written from left to right.


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